P. Gillet, Terrestrial biological activity in the Tatahouine meteorite. Clues for the search of nanometric life traces in rocks, Earth Plan. Sci. Lett, vol.175, pp.161-167, 2000.

T. Heulin, Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. nov., cyst-producing bacteria isolated from sub-desert soil in Tunisia, Int. J. Syst. Evol. Microbiol, vol.53, pp.589-594, 2003.

K. Benzerara, Experimental colonization and alteration of orthopyroxene by the pleiomorphic bacteria Ramlibacter tataouinensis, Geomicrobiol. J, vol.21, pp.341-349, 2004.

M. Gommeaux, M. Barakat, M. Lesourd, J. Thiery, and T. Heulin, A morphological transition in the pleiomorphic bacterium Ramlibacter tataouinensis TTB310, Res. Microbiol, vol.156, pp.1026-1030, 2005.

G. De-luca, The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment, PLoS ONE, vol.6, 2011.
URL : https://hal.archives-ouvertes.fr/hal-00636313

P. R. Gabe and L. E. De-bault, Macromolecular syntheses related to the reproductive cyst of Tetrahymena patula, J. Cell Biol, vol.59, pp.615-623, 1973.

H. Long and R. A. Zufall, Diverse modes of reproduction in the marine free-living ciliate Glauconema trihymene, BMC Microbiol, vol.10, pp.108-119, 2010.

J. E. Berleman and C. E. Bauer, Characterization of cyst formation in the purple photosynthetic bacterium Rhodospirillum centenum, Microbiology, vol.150, pp.383-390, 2004.

J. E. Berleman, B. M. Hasselbring, and C. E. Bauer, Hypercyst mutants in Rhodospirillum centenum identify regulatory loci involved in cyst cell differentiation, J. Bacteriol, vol.186, pp.5834-5841, 2004.

C. Mandalari, A. Losi, and W. Gärtner, Distance-tree analysis, distribution and copresence of bilin-and flavin-binding prokaryotic photoreceptors for visible light, Photochem. Photobiol. Sci, vol.12, pp.1144-1157, 2013.

N. C. Rockwell, Y. S. Su, and J. C. Lagarias, Phytochrome structure and signaling mechanisms, Annu. Rev. Plant Biol, vol.57, pp.837-858, 2006.

B. Karniol, J. R. Wagner, J. M. Walker, and R. D. Vierstra, Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors, Biochem. J, vol.392, pp.103-116, 2005.

L. Wu, R. S. Mcgrane, and G. A. Beattie, Light regulation of swarming motility in Pseudomonas syringae integrates signaling pathways mediated by a bacteriophytochrome and a LOV protein, vol.4, pp.334-347, 2013.

S. Masuda and C. E. Bauer, AppA is a blue light photoreceptor that antirepresses photosynthesis gene expression in Rhodobacter sphaeroides, Cell, vol.110, pp.613-623, 2002.

S. Metz, Interaction of two photoreceptors in the regulation of bacterial photosynthesis genes, Nucleic Acids Res, vol.40, pp.5901-5909, 2012.

M. Avila-perez, K. J. Hellingwerf, and R. Kort, Blue light activates the sigmaB-dependent stress response of Bacillus subtilis via YtvA, J. Bacteriol, vol.188, pp.6411-6414, 2006.

T. A. Gaidenko, T. J. Kim, A. L. Weigel, M. S. Brody, and C. W. Price, The blue-light receptor YtvA acts in the environmental stress signaling pathway of Bacillus subtilis, J. Bacteriol, vol.188, pp.6387-6395, 2006.

T. E. Swartz, Blue-light-activated histidine kinases: two-component sensors in bacteria, Science, vol.317, pp.1090-1093, 2007.

T. S. Tseng, M. A. Frederickson, W. R. Briggs, and R. A. Bogomolni, Light-activated bacterial LOV-domain histidine kinases, Methods Enzymol, vol.471, pp.125-134, 2010.

M. Gomelsky and W. D. Hoff, Light helps bacteria make important lifestyle decisions, Trends Microbiol, vol.19, pp.441-448, 2011.

B. Fiedler, Involvement of cyanobacterial phytochromes in growth under different light qualities and quantities, Photochem. Photobiol, vol.79, pp.551-555, 2004.

A. Wilde, B. Fiedler, and T. Börner, The cyanobacterial phytochrome Cph2 inhibits phototaxis towards blue light, Mol. Microbiol, vol.44, pp.981-988, 2002.

E. Giraud, Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria, Nature, vol.417, pp.202-205, 2002.

E. Giraud and A. Verméglio, Bacteriophytochromes in anoxygenic photosynthetic bacteria, Photosynth. Res, vol.97, pp.141-153, 2008.

S. J. Davis, A. V. Vener, and R. D. Vierstra, Bacteriophytochromes: phytochrome like photoreceptors from non-photosynthetic eubacteria, Science, vol.286, pp.2517-2520, 1999.

K. Barkovits, B. Schubert, S. Heine, M. Scheer, and N. Frankenberg-dinkel, Function of the bacteriophytochrome BphP in the RpoS/ Las quorum-sensing network of Pseudomonas aeruginosa, Microbiology, vol.157, pp.1651-1664, 2011.

S. Kumar, Bacteriophytochrome controls carotenoid-independent response to photodynamic stress in a non-photosynthetic rhizobacterium, Azospirillum brasilense Sp7. Sci. Rep, vol.2, 2012.

Y. Bai, G. Rottwinkel, J. Feng, Y. Liu, and T. Lamparter, Bacteriophytochromes control conjugation in Agrobacterium fabrum, J. Photochem. Photobiol. B, vol.161, pp.192-199, 2016.

S. Santamaria-hernando, Pseudomonas syringae pv. tomato exploits light signals to optimize virulence and colonization of leaves, Environ. Microbiol, vol.20, pp.4261-4280, 2018.

E. Giraud, A new type of bacteriophytochrome acts in tandem with a classical bacteriophytochrome to control the antennae synthesis in Rhodopseudomonas palustris, J. Biol. Chem, vol.280, pp.32389-32397, 2005.

A. W. Baker, K. A. Satyshur, N. Moreno-morales, and K. T. Forest, Arm-in-arm response regulator dimers promote intermolecular signal transduction, J. Bacteriol, vol.198, pp.1218-1229, 2016.

E. Giraud, J. Lavergne, and A. Verméglio, Characterization of bacteriophytochrome from photosynthetic bacteria: histidine kinase signaling triggered by light and redox sensing, Methods Enzymol, vol.471, pp.135-159, 2010.

T. Lamparter, N. Michael, F. Mittmann, and B. Esteban, Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site, Proc. Natl. Acad. Sci. USA, vol.99, pp.11628-11633, 2002.

A. Krieger, I. Molina, I. Oberpichler, N. Michael, and T. Lamparter, Spectral properties of phytochrome Agp2 from Agrobacterium tumefaciens are specifically modified by a compound of the cell extract, J. Photochem. Photobiol. B, vol.93, pp.16-22, 2008.

I. Oberpichler, I. Molina, O. Neubauer, and T. Lamparter, Phytochromes from Agrobacterium tumefaciens: Difference spectroscopy with extracts of wild type and knockout mutants, FEBS Lett, vol.580, pp.437-442, 2006.

D. Bellini and M. Papiz, Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor, Structure, vol.20, pp.1436-1446, 2012.

J. A. Kyndt, Regulation of the Ppr histidine kinase by light-induced interactions between its photoactive yellow protein and bacteriophytochrome domains, Biochemistry, vol.49, pp.1744-1754, 2010.

J. A. Kyndt, T. E. Meyer, and M. A. Cusanovich, Photoactive yellow protein, bacteriophytochrome, and sensory rhodopsin in purple phototrophic bacteria, Photochem. Photobiol. Sci, vol.3, pp.519-530, 2004.

Z. Y. Jiang, Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes, Science, vol.285, pp.406-409, 1999.

T. Clack, Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic Helix-Loop-Helix transcription factor W, Plant Cell, vol.21, pp.786-799, 2009.

X. Xie, T. Kagawa, and M. Takano, The phytochrome B/phytochrome C heterodimer is necessary for phytochrome C-mediated responses in rice seedlings, PLoS ONE, vol.9, 2014.

M. E. Kovach, Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes, Gene, vol.166, pp.175-176, 1995.

G. Demarre, A new family of mobilizable suicide plasmids based on broad host range R388 plasmid (IncW) and RP4 plasmid (IncPalpha) conjugative machineries and their cognate Escherichia coli host strains, Res. Microbiol, vol.156, pp.245-255, 2005.

F. Le-roux, J. Binesse, D. Saulnier, and D. Mazel, Construction of a Vibrio splendidus mutant lacking the metalloprotease gene vsm by use of a novel counterselectable suicide vector, Appl. Environ. Microbiol, vol.73, pp.777-784, 2007.

M. De-rivoyre, N. Ginet, P. Bouyer, and J. Lavergne, Excitation transfer connectivity in different purple bacteria: A theoretical and experimental study, Biochim. Biophys. Acta, vol.1797, pp.1780-1794, 2010.

P. Joliot, D. Béal, and B. Frilley, Une nouvelle méthode spectrophotométrique destinée à l'étude des réactions photosynthétiques, J. Chim. Phys, vol.77, pp.209-216, 1980.

P. Ortet, D. E. Whitworth, C. Santaella, W. Achouak, and M. Barakat, P2CS: updates of the prokaryotic two-component systems database, Nucleic Acids Res, vol.43, pp.536-541, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01229516

A. Dereeper, Phylogeny.fr: robust phylogenetic analysis for the non-specialist, Nucleic Acids Res, vol.36, pp.465-469, 2008.
URL : https://hal.archives-ouvertes.fr/lirmm-00324099