The mineral nutrition of wild plants revisited: a re-evaluation of processes and patterns, Advances in Ecological Research, pp.1-67, 1999. ,
, The role of root exudates in rhizosphere interactions with plants and other organisms, 2006.
, Annu. Rev. Plant Biol, vol.57, pp.233-266
Using network analysis to explore co-occurrence patterns in soil microbial communities, ISME J, vol.6, pp.343-351, 2012. ,
Evidence for biological denitrification inhibition (BDI) by plant secondary metabolites, New Phytol, vol.204, pp.620-630, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01085302
Taxonomy, physiology, and natural products of actinobacteria. Microbiol, Mol. Biol. Rev, vol.80, pp.1-43, 2016. ,
Plant-microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture, Appl. Microbiol. Biotechnol, vol.84, pp.11-18, 2009. ,
The under-recognized dominance of Verrucomicrobia in soil bacterial communities, Soil Biol. Biochem, vol.43, pp.1450-1455, 2011. ,
Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling, Mol. Phylogenet. Evol, vol.47, pp.488-505, 2008. ,
The rhizosphere zoo: an overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors, Plant Soil, vol.321, pp.189-212, 2009. ,
Structure and functions of the bacterial microbiota of plants, Annu. Rev. Plant Biol, vol.64, pp.807-838, 2013. ,
Using plant traits to explain plantmicrobe relationships involved in nitrogen acquisition, Ecology, vol.96, pp.788-799, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02183507
QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, vol.7, pp.335-336, 2010. ,
Isolation and identification of actinobacteria from surface-sterilized wheat roots, Appl. Environ. Microbiol, vol.69, pp.5603-5608, 2003. ,
Complete nitrification by Nitrospira bacteria, Nature, vol.528, pp.504-509, 2015. ,
Plant functional traits and soil carbon sequestration in contrasting biomes, Ecol. Lett, vol.11, pp.516-531, 2008. ,
Microbiote shift in the Medicago sativa rhizosphere in response to cyanotoxins extract exposure, Sci. Total Environ, vol.539, pp.135-142, 2016. ,
URL : https://hal.archives-ouvertes.fr/cea-02194508
FROGS: find rapidly OTU with galaxy solution, Bioinformatics, vol.34, pp.1287-1294, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01886442
Toward an ecological classification of soil bacteria, Ecology, vol.88, pp.1354-1364, 2007. ,
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients, ISME J, vol.6, pp.1007-1017, 2012. ,
The priming effect of organic matter: a question of microbial competition?, Soil Biol. Biochem, vol.35, pp.837-843, 2003. ,
Relationships between functional traits and inorganic nitrogen acquisition among eight contrasting European grass species, Ann. Bot, vol.115, pp.107-115, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-02183520
Rhizosphere carbon flow in trees, in comparison with annual plants: the importance of root exudation and its impact on microbial activity and nutrient availability, Appl. Soil Ecol, vol.5, pp.29-56, 1997. ,
Relative contributions of plant traits and soil microbial properties to mountain grassland ecosystem services, J. Ecol, vol.101, pp.47-57, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01687645
Linking individual response to biotic interactions with community structure: a trait-based framework, Funct. Ecol, vol.23, pp.1167-1178, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-02591936
Leaf dry matter content and lateral spread predict response to land use change for six subalpine grassland species, J. Veg. Sci, vol.18, pp.289-300, 2007. ,
URL : https://hal.archives-ouvertes.fr/halsde-00283762
Root exudation rate as a functional trait involved in plant nutrient-use strategy classification, Ecol. Evol, vol.8, pp.8573-8581, 2018. ,
The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites, FEMS Microbiol. Ecol, vol.93, p.22, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01608484
Microbiota and host nutrition across plant and animal kingdoms, Cell Host Microbe, vol.17, pp.603-616, 2015. ,
Identification of cellulolytic bacteria in soil by stable isotope probing, Environ. Microbiol, vol.9, pp.625-634, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00318792
Plant host habitat and root exudates shape soil bacterial community structure, ISME J, vol.2, 2008. ,
Stable isotope probing of bacterial community structure and gene expression in the rhizosphere of Arabidopsis thaliana, FEMS Microbiol. Ecol, vol.81, pp.291-302, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-02532798
Root exudates mediated interactions belowground, Soil Biol. Biochem, vol.77, pp.69-80, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-02487459
Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates, Environ. Microbiol, vol.10, pp.3082-3092, 2008. ,
Plant and mycorrhizal regulation of rhizodeposition, New Phytol, vol.163, 2004. ,
Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira, Proc. Natl. Acad. Sci. U.S.A, vol.112, pp.11371-11376, 2015. ,
Plant nutrientacquisition strategies change with soil age, Trends Ecol. Evol, vol.23, pp.95-103, 2008. ,
N2O production, a widespread trait in fungi, Sci. Rep, vol.5, p.9697, 2015. ,
Swarm: robust and fast clustering method for amplicon-based studies, PeerJ, vol.2, p.593, 2014. ,
Trade-off between root nitrogen acquisition and shoot nitrogen utilization across 13 co-occurring pasture grass species, Funct. Ecol, vol.23, pp.668-679, 2009. ,
Rebuilding community ecology from functional traits, Trends Ecol. Evol, vol.21, pp.178-185, 2006. ,
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data, PLoS One, vol.8, p.61217, 2013. ,
Deciphering the rhizosphere microbiome for diseasesuppressive bacteria, Science, vol.332, pp.1097-1100, 2011. ,
Influence of maize mucilage on the diversity and activity of the denitrifying community, Environ. Microbiol, vol.6, pp.301-312, 2004. ,
Linkages of plant traits to soil properties and the functioning of temperate grassland, J. Ecol, vol.98, pp.1074-1083, 2010. ,
Diversity and heritability of the maize rhizosphere microbiome under field conditions, Proc. Natl. Acad. Sci. U.S.A, vol.110, pp.6548-6553, 2013. ,
How does the nature of living and dead roots affect the residence time of carbon in the root litter continuum?, Plant Soil, vol.267, pp.129-141, 2004. ,
Sampling strategy in molecular microbial ecology: influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities, Environ. Microbiol, vol.5, pp.1111-1120, 2003. ,
Root and leaf attributes accounting for the performance of fast-and slow-growing grasses at different nutrient supply, Plant Soil, vol.170, pp.251-265, 1995. ,
The plant-growthpromoting rhizobacterium Paenibacillus sp. strain B2 stimulates wheat defense mechanisms against septoria leaf blotch and root colonization by Curtobacterium plantarum, Biol. Control, vol.114, pp.87-96, 2017. ,
Virtual community success: a uses and gratifications perspective, Proceedings of the 38th Annual Hawaii International Conference on System Sciences, p.193, 2005. ,
Beyond the Venn Diagram: The Hunt For a Core Microbiomeemi_2585, 2011. ,
Characterization of nutrients in built-up broiler litter using trench and random walk sampling methods, J. Appl. Poult. Res, vol.13, pp.426-432, 2004. ,
Unravelling rhizosphere-microbial interactions: opportunities and limitations, Trends Microbiol, vol.12, pp.386-393, 2004. ,
, R: A Language and Environment for Statistical Computing. Vienna: R Foundation for Statistical Computing, 2015.
Constraints and tradeoffs: toward a predictive theory of competition and succession, Oikos, vol.58, pp.3-15, 1990. ,
Let the concept of trait be functional, Oikos, vol.116, pp.882-892, 2007. ,
Naïve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol, vol.73, pp.5261-5267, 2007. ,
Demonstrating microbial co-occurrence pattern analyses within and between ecosystems, Front. Microbiol, vol.5, p.358, 2014. ,