F. D. Sikkema, M. Comellas-aragones, R. G. Fokkink, B. J. Verduin, J. Cornelissen et al., Monodisperse polymer???virus hybrid nanoparticles, Org. Biomol. Chem., vol.16, issue.1, p.54, 2007.
DOI : 10.1039/b604582k

P. Ni, Z. Wang, X. Ma, N. C. Das, P. Sokol et al., An Examination of the Electrostatic Interactions between the N-Terminal Tail of the Brome Mosaic Virus Coat Protein and Encapsidated RNAs, Journal of Molecular Biology, vol.419, issue.5, p.284, 2012.
DOI : 10.1016/j.jmb.2012.03.023

A. L. Bozic, A. Siber, and R. Podgornik, Statistical analysis of sizes and shapes of virus capsids and their resulting elastic properties, Journal of Biological Physics, vol.61, issue.654, p.215, 2013.
DOI : 10.1063/1.2835152

A. Zlotnick, R. Aldrich, J. M. Johnson, P. Ceres, and M. J. Young, Mechanism of Capsid Assembly for an Icosahedral Plant Virus, Virology, vol.277, issue.2, p.450, 2000.
DOI : 10.1006/viro.2000.0619

J. Ning, G. Erdemci-tandogan, E. L. Yufenyuy, J. Wagner, B. A. Himes et al., In vitro protease cleavage and computer simulations reveal the HIV-1 capsid maturation pathway, Nature Communications, vol.283, p.13689, 2016.
DOI : 10.1126/science.283.5398.80

A. Luque, R. Zandi, and D. Reguera, Optimal architectures of elongated viruses, Proceedings of the National Academy of Sciences, vol.171, issue.2, p.5323, 2010.
DOI : 10.1016/S0022-2836(83)80350-7

R. Kusters, H. Lin, R. Zandi, I. Tsvetkova, B. Dragnea et al., Role of Charge Regulation and Size Polydispersity in Nanoparticle Encapsulation by Viral Coat Proteins, The Journal of Physical Chemistry B, vol.119, issue.5, p.1869, 2015.
DOI : 10.1021/jp5108125

M. F. Hagan and R. Zandi, Recent advances in coarse-grained modeling of virus assembly, Current Opinion in Virology, vol.18, p.36, 2016.
DOI : 10.1016/j.coviro.2016.02.012

P. G. Stockley, R. Twarock, S. E. Bakker, A. M. Barker, A. Borodavka et al., Packaging signals in single-stranded RNA viruses: nature???s alternative to a purely electrostatic assembly mechanism, Journal of Biological Physics, vol.10, issue.41, p.277, 2013.
DOI : 10.4161/rna.23838

H. Lin, P. Van-der-schoot, and R. Zandi, Impact of charge variation on the encapsulation of nanoparticles by virus coat proteins, Physical Biology, vol.9, issue.6, p.66004, 2012.
DOI : 10.1088/1478-3975/9/6/066004

V. Sivanandam, D. Mathews, R. Garmann, G. Erdemci-tandogan, R. Zandi et al., Functional analysis of the N-terminal basic motif of a eukaryotic satellite RNA virus capsid protein in replication and packaging, Scientific Reports, vol.23, issue.1, p.26328, 2016.
DOI : 10.1038/sj.emboj.7600096

J. Wagner and R. Zandi, The Robust Assembly of Small Symmetric Nanoshells, Biophysical Journal, vol.109, issue.5, p.956, 2015.
DOI : 10.1016/j.bpj.2015.07.041

J. Wagner, G. Erdemci-tandogan, and R. Zandi, Adsorption of annealed branched polymers on curved surfaces, Journal of Physics: Condensed Matter, vol.27, issue.49, p.495101, 2015.
DOI : 10.1088/0953-8984/27/49/495101

]. P. Van-der-schoot and R. Bruinsma, Electrostatics and the assembly of an RNA virus, Physical Review E, vol.40, issue.6, p.61928, 2005.
DOI : 10.1016/j.jmb.2003.10.059

G. Erdemci-tandogan, J. Wagner, P. Van-der-schoot, R. Podgornik, and R. Zandi, RNA topology remolds electrostatic stabilization of viruses, Physical Review E, vol.155, issue.3, p.32707, 2014.
DOI : 10.1007/BF00818163

G. Erdemci-tandogan, J. Wagner, P. Van-der-schoot, R. Podgornik, and R. Zandi, Effects of RNA branching on the electrostatic stabilization of viruses, Physical Review E, vol.94, issue.2, p.22408, 2016.
DOI : 10.1093/nar/gkg595

A. Siber and R. Podgornik, Nonspecific interactions in spontaneous assembly of empty versus functional single-stranded RNA viruses, Physical Review E, vol.63, issue.5, p.51915, 2008.
DOI : 10.1006/viro.2000.0619

A. Siber, R. Zandi, and R. Podgornik, Thermodynamics of nanospheres encapsulated in virus capsids, Physical Review E, vol.27, issue.5, p.51919, 2010.
DOI : 10.1103/PhysRevE.80.021910

G. Erdemci-tandogan, H. Orland, and R. Zandi, RNA Base Pairing Determines the Conformations of RNA Inside Spherical Viruses, Physical Review Letters, vol.119, issue.18, p.188102, 2017.
DOI : 10.1088/0305-4470/32/23/309

URL : https://hal.archives-ouvertes.fr/cea-01708297

M. Comas-garcia, R. D. Cadena-nava, A. L. Rao, C. M. Knobler, and W. M. Gelbart, In Vitro Quantification of the Relative Packaging Efficiencies of Single-Stranded RNA Molecules by Viral Capsid Protein, Journal of Virology, vol.86, issue.22, p.12271, 2012.
DOI : 10.1128/JVI.01695-12

V. Rayaprolu, A. Moore, J. C. Wang, B. C. Goh, J. R. Perilla et al., assembled alphavirus core-like particles, Journal of Physics: Condensed Matter, vol.29, issue.48, p.484003, 2017.
DOI : 10.1088/1361-648X/aa90d0

S. F. Edwards, The statistical mechanics of polymers with excluded volume, Proceedings of the Physical Society, vol.85, issue.4, p.613, 1965.
DOI : 10.1088/0370-1328/85/4/301

G. Fredrickson, The equilibrium theory of inhomogeneous polymers, 2006.
DOI : 10.1093/acprof:oso/9780198567295.001.0001

M. Doi and S. F. Edwards, The Theory of Polymer Dynamics, International Series of Monographs on Physics, vol.73, 1986.

J. A. Abels, F. Moreno-herrero, T. Van-der-heijden, C. Dekker, and N. H. Dekker, Single-Molecule Measurements of the Persistence Length of Double-Stranded RNA, Biophysical Journal, vol.88, issue.4, p.2737, 2005.
DOI : 10.1529/biophysj.104.052811

H. Ji and D. Hone, Polymer adsorption on rough surfaces. 2. Good solvent conditions, Macromolecules, vol.21, issue.8, p.2600, 1988.
DOI : 10.1021/ma00186a049

X. Man, S. Yang, D. Yan, and A. C. Shi, Adsorption and Depletion of Polyelectrolytes in Charged Cylindrical System within Self-Consistent Field Theory, Macromolecules, vol.41, issue.14, p.5451, 2008.
DOI : 10.1021/ma8003482

P. A. Pincus, C. J. Sandroff, and T. A. Witten, Polymer adsorption on colloidal particles, Journal de Physique, vol.32, issue.D, p.725, 1984.
DOI : 10.1051/jphys:01984004504072500

URL : https://hal.archives-ouvertes.fr/jpa-00209803

D. Hone, H. Ji, and P. A. Pincus, Polymer adsorption on rough surfaces. 1. Ideal long chain, Macromolecules, vol.20, issue.10, p.2543, 1987.
DOI : 10.1021/ma00176a038

E. Eisenriegler, K. Kremer, and K. Binder, Adsorption of polymer chains at surfaces: Scaling and Monte Carlo analyses, The Journal of Chemical Physics, vol.77, issue.12, p.6296, 1982.
DOI : 10.1088/0305-4470/14/2/019

M. Brasch, I. K. Voets, M. S. Koay, and J. J. Cornelissen, Phototriggered cargo release from virus-like assemblies, Faraday Discussions, vol.1, p.47, 2013.
DOI : 10.1039/B714748A

G. Erdemci-tandogan, J. Wagner, P. Van-der-schoot, R. Podgornik, and R. Zandi, Effects of RNA branching on the electrostatic stabilization of viruses, Physical Review E, vol.94, issue.2, p.22408, 2016.
DOI : 10.1093/nar/gkg595