V. Georgakilas, M. Otyepka, A. B. Bourlinos, V. Chandra, N. Kim et al., Functionalization of Graphene: Covalent and Non-Covalent Approaches, Derivatives and Applications, Chemical Reviews, vol.112, pp.6156-6214, 2012.

M. C. Daniel and D. Astruc, Gold nanoparticles: Assembly, supramolecular chemistry, quantum-size-related properties, and applications toward biology, catalysis, and nanotechnology, Chemical Reviews, vol.104, pp.293-346, 2004.

M. O. Lorenzo, C. J. Baddeley, C. Muryn, and R. , Extended surface chirality from supramolecular assemblies of adsorbed chiral molecules, Nature, vol.404, pp.376-379, 2000.

E. Busseron, Y. Ruff, E. Moulin, and N. Giuseppone, Supramolecular self-assemblies as functional nanomaterials, Nanoscale, vol.5, pp.7098-7140, 2013.

C. Fu, H. Lin, J. M. Macleod, A. Krayev, F. Rosei et al., Unravelling the Self-Assembly of Hydrogen Bonded NDI Semiconductors in 2D and 3D, Chemistry of Materials, vol.28, pp.951-961, 2016.

X. Lefèvre, F. Moggia, O. Segut, Y. Lin, Y. Ksari et al., Influence of Molecular Organization on the Electrical Characteristics of ?-Conjugated Self-Assembled Monolayers, Journal of Physical Chemistry C, vol.119, pp.5703-5713, 2015.

Y. Zang, T. Aoki, M. Teraguchi, T. Kaneko, L. Ma et al., Two-Dimensional and Related Polymers: Concepts, Synthesis, and their Potential Application as Separation Membrane Materials, Polymer Reviews, vol.55, pp.57-89, 2015.

H. Chang and H. Wu, Graphene-based nanocomposites: preparation, functionalization, and energy and environmental applications, Energy & Environmental Science, vol.6, pp.3483-3507, 2013.

L. Voorhaar and R. Hoogenboom, Supramolecular polymer networks: hydrogels and bulk materials, Chem. Soc. Rev, vol.45, pp.4013-4031, 2016.

P. Lang, Z. Qin, V. Noel, M. Seydou, N. Battaglini et al., Relationship between Domain Size and Electrochemical Properties, vol.119, pp.29015-29026, 2015.

R. E. Kelly, W. Xu, M. Lukas, R. Otero, M. Mura et al., An investigation into the interactions between self-assembled adenine molecules and a Au(111) surface, Small, vol.4, pp.1494-1500, 2008.

M. Mura, A. Gulans, T. Thonhauser, and L. Kantorovich, Role of van der Waals interaction in forming molecule-metal junctions: flat organic molecules on the Au(111) surface, Physical Chemistry Chemical Physics, vol.12, pp.4759-4767, 2010.

M. Mura, N. Martsinovich, and L. Kantorovich, Theoritical study of melamine superstructures and theirs interaction with Au(111) surface, Nanotechnology, vol.19, p.465704, 2008.

M. Mura, F. Silly, G. A. Briggs, M. R. Castell, and L. N. Kantorovich, H-Bonding Supramolecular Assemblies of PTCDI Molecules on the Au(111) Surface, Journal of Physical Chemistry C, vol.113, pp.21840-21848, 2009.

M. Mura, X. Sun, F. Silly, H. T. Jonkman, G. A. Briggs et al., Experimental and theoretical analysis of H-bonded supramolecular assemblies of PTCDA molecules, Physical Review B, vol.81, 2010.

M. Sassi, V. Oison, and J. M. Debierre, First principle study of a bimolecular thin film on Ag(111) surface, Surface Science, vol.602, pp.2856-2862, 2008.

A. Ciesielski, C. Palma, M. Bonini, and P. Samorì, Towards Supramolecular Engineering of Functional Nanomaterials: Pre-Programming Multi-Component 2D Self-Assembly at Solid-Liquid Interfaces, Advanced Materials, vol.22, pp.3506-3520, 2010.

J. Teyssandier, N. Battaglini, M. Seydou, G. Anquetin, B. Diawara et al., Elaboration of Hydrogen-Bonded 2D Supramolecular Assemblies on Au(111) From Solutions: Toward Naphthalene Tetracarboxylic Diimide-Melamine Nanoporous Networks, Journal of Physical Chemistry C, vol.117, pp.8737-8745, 2013.

M. Seydou, J. Teyssandier, N. Battaglini, G. T. Kenfack, P. Lang et al., Characterization of NTCDI supra-molecular networks on Au(111); combining STM, IR and DFT calculations, RSC Adv, vol.4, p.25698, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01275052

S. P. Jarvis, A. M. Sweetman, I. Lekkas, N. R. Champness, L. Kantorovich et al., Simulated structure and imaging of NTCDI on Si(1 1 1)-7 × 7 : a combined STM, NC-AFM and DFT study, vol.27, p.54004, 2015.

X. Zhang, T. Chen, Q. Chen, L. Wang, and L. Wan, Self-assembly and aggregation of melamine and melamine-uric/cyanuric acid investigated by STM and AFM on solid surfaces, Phys. Chem. Chem. Phys, vol.11, pp.7708-7712, 2009.

S. K. Henze, O. Bauer, T. L. Lee, M. Sokolowski, and F. S. Tautz, Vertical bonding distances of PTCDA on Au(111) and Ag, vol.601, pp.1566-1573, 2007.

E. Rauls, S. Blankenburg, and W. G. Schmidt, Chemical reactivity on surfaces: Modeling the imide synthesis from DATP and PTCDA on Au, vol.81, 2010.

X. N. Sun, M. Mura, H. T. Jonkman, L. N. Kantorovich, and F. Silly, Fabrication of a Complex Two-Dimensional Adenine-Perylene-3,4,9, 10-tetracarboxylic Dianhydride Chiral Nanoarchitecture through Molecular Self-Assembly, Journal of Physical Chemistry C, vol.116, pp.2493-2499, 2012.
URL : https://hal.archives-ouvertes.fr/cea-00838027

K. S. Novoselov, A. K. Geim, S. V. Morozov, D. Jiang, Y. Zhang et al.,

A. A. Grigorieva and . Firsov, « Electric Field Effect in Atomically Thin Carbon Films, vol.306, pp.666-669, 2004.

D. Chen, L. Tang, and J. Li, Graphene-based materials in electrochemistry, Chemical Society Reviews, vol.39, pp.3157-3180, 2010.

Z. Liu, S. P. Lau, and F. Yan, Functionalized graphene and other two-dimensional materials for photovoltaic devices: device design and processing, Chemical Society Reviews, vol.44, pp.5638-5679, 2015.

P. Miro, M. Audiffred, and T. Heine, An atlas of two-dimensional materials, Chemical Society Reviews, vol.43, pp.6537-6554, 2014.

X. Zhuang, Y. Mai, D. Wu, F. Zhang, and X. Feng, Two-Dimensional Soft Nanomaterials: A Fascinating World of Materials, Advanced Materials, vol.27, pp.403-427, 2015.

M. Seydou, S. Marsaudon, J. Buchoux, J. P. Aimé, and A. M. Bonnot, Molecular mechanics investigations of carbon nanotube and graphene sheet interaction, Physical Review B, vol.80, p.245421, 2009.
URL : https://hal.archives-ouvertes.fr/hal-01075297

X. Zhang, T. Chen, Q. Chen, L. Wang, and L. Wan, Self-assembly and aggregation of melamine and melamine-uric/cyanuric acid investigated by STM and AFM on solid surfaces, Physical Chemistry Chemical Physics, vol.11, pp.7708-7712, 2009.

H. Medina, Y. Lin, D. Obergfell, and P. Chiu, Tuning of Charge Densities in Graphene by Molecule Doping, Adv. Funct. Mater, vol.21, pp.2687-2692, 2011.

Z. Zhang, H. Huang, X. Yang, and L. Zang, Tailoring Electronic Properties of Graphene by ?-? Stacking with Aromatic Molecules, J. Phys. Chem. Lett, vol.2, pp.2897-2905, 2011.

H. Yang, A. J. Mayne, G. Comtet, G. Dujardin, Y. Kuk et al., STM imaging, spectroscopy and manipulation of a self-assembled PTCDI monolayer on epitaxial graphene, Phys.Chem. Chem. Phys, vol.15, p.4939, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01798180

S. Vojtech, H. Pavel, and R. , Free-Energy Simulations of Hydrogen Bonding versus Stacking of Nucleobases on a Graphene Surface, Journal of Physical Chemistry C, vol.115, pp.19455-19462, 2011.

P. I. Järvinen, S. K. Hämäläinen, M. Ijäs, A. Harju, and P. Liljeroth, Self-Assembly and Orbital Imaging of Metal Phthalocyanines on a Graphene Model Surface, Journal of Physical Chemistry C, vol.118, pp.13320-13325, 2014.

S. J. Altenburg, M. Lattelais, B. Wang, M. Bocquet, and R. Berndt, Reaction of Phthalocyanines with Graphene on Ir(111), J. Am. Chem. Soc, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01896334

R. N. Gunasinghe, D. G. Reuven, K. Suggs, and X. Wang, Filled and Empty Orbital Interactions in a Planar Covalent Organic Framework on Graphene, J. Phys. Chem. Lett, vol.3, pp.3048-3052, 2012.

X. Zeng, S. Chang, K. Deng, J. Zhang, H. Sun et al., Synthesis and Molecular Structures of BINOL Complexes: An STM Investigation of 2D Self-Assembly, Cryst. Growth Des, vol.15, pp.3096-3100, 2015.

J. M. Macleod, J. A. Lipton-duffin, D. Cui, S. D. Feyter, and F. Rosei, Substrate Effects in the Supramolecular Assembly of 1,3,5-Benzene Tricarboxylic Acid on Graphite and Graphene, Langmuir, vol.31, pp.7016-7024, 2015.

B. Wanno and C. Tabtimsai, A DFT investigation of CO adsorption on VIIIB transition metal-doped graphene sheets, Superlattices and Microstructures, vol.67, pp.110-117, 2014.

S. Rahali, Y. Belhocine, J. Touzeau, B. Tangour, F. Maurel et al., Balance between physical and chemical interactions of second-row diatomic molecules with graphene sheet, Superlattices and Microstructures, 2016.

A. H. Mashhadzadeh, A. M. Vahedi, M. Ardjmand, and M. G. Ahangari, Investigation of heavy metal atoms adsorption onto graphene and graphdiyne surface: A density functional theory study, Superlattices and Microstructures, vol.100, pp.1094-1102, 2016.

S. Grimme, Density functional theory with London dispersion corrections, Wiley Interdisciplinary Reviews-Computational Molecular Science, vol.1, pp.211-228, 2011.

G. Kresse and J. Hafner, Ab-initio molecular-dynamics for liquid-metals, Physical Review B, vol.47, pp.558-561, 1993.

G. Kresse and J. Hafner, Ab-initio molecular-dynamics simulation of the liquid-metal amorphous-semiconductor transition in germanium, Physical Review B, vol.49, pp.14251-14269, 1994.

P. E. Blochl, Projector Augmented-Wave Method, Physical Review B, vol.50, pp.17953-17979, 1994.

G. Kresse and D. Joubert, From ultrasoft pseudopotentials to the projector augmented-wave method, Physical Review B, vol.59, pp.1758-1775, 1999.

B. Hammer, L. B. Hansen, and J. K. Norskov, Improved adsorption energetics within densityfunctional theory using revised Perdew-Burke-Ernzerhof functionals, Physical Review B, vol.59, pp.7413-7421, 1999.

J. P. Perdew, K. Burke, and M. Ernzerhof, Generalized gradient approximation made simple, vol.77, pp.1396-1396, 1996.

S. Grimme, Semiempirical GGA-type density functional constructed with a long-range dispersion correction, Journal of Computational Chemistry, vol.27, pp.1787-1799, 2006.

V. León, A. M. Rodriguez, P. Prieto, M. Prato, and E. Vázquez, Exfoliation of Graphite with Triazine Derivatives under Ball-Milling Conditions: Preparation of Few-Layer Graphene via Selective Noncovalent Interactions, ACS Nano, vol.8, pp.563-571, 2014.

C. Chang, X. Fan, L. Li, and J. Kuo, Band Gap Tuning of Graphene by Adsorption of Aromatic Molecules, Journal of Physical Chemistry C, vol.116, pp.13788-13794, 2012.

E. G. Gordeev, M. V. Polynski, and V. P. Ananikov, Fast and accurate computational modeling of adsorption on graphene: a dispersion interaction challenge, Phys. Chem. Chem. Phys, vol.15, pp.18815-18821, 2013.

M. Seydou, Y. J. Dappe, S. Marsaudon, J. P. Aimé, X. Bouju et al., Atomic force microscope measurements and LCAO-S2 + vdW calculations of contact length between a carbon nanotube and a graphene surface, Physical Review B, vol.83, p.45410, 2011.

P. A. Denis, Chemical Reactivity of Electron-Doped and Hole-Doped Graphene, Journal of Physical Chemistry C, vol.117, pp.3895-3902, 2013.

S. Panigrahi, A. Bhattacharya, S. Banerjee, and D. Bhattacharyya, Interaction of Nucleobases with Wrinkled Graphene Surface: Dispersion Corrected DFT and AFM Studies, Journal of Physical Chemistry C, vol.116, pp.4374-4379, 2012.

W. Song, N. Martsinovich, W. M. Heckl, and M. Lackinger, Born?Haber Cycle for Monolayer Self-Assembly at the Liquid?Solid Interface: Assessing the Enthalpic Driving Force, J. Am. Chem. Soc, vol.135, pp.14854-14862, 2013.

J. Wen and J. Ma, Modulating Morphology of Thiol-Based Monolayers in Honeycomb Hydrogen-Bonded Nanoporous Templates on the Au(111) Surface: Simulations with the Modified Force Field, Journal of Physical Chemistry C, vol.116, pp.8523-8534, 2012.

M. Pizzochero, M. Bonfanti, and R. Martinazzo, Hydrogen on silicone: like or unlike graphene?, Phys. Chem. Chem. Phys, vol.18, pp.15654-156, 2016.

N. D. Mermin and H. Wagner, Absence of Ferromagnetism or Antiferromagnetism in Oneor Two Dimensional Isotropic, Phys. Rev. Lett, vol.17, pp.1133-1136, 1966.

M. Roos, D. Künzel, B. Uhl, H. Huang, O. B. Alves et al., Hierarchical Interactions and Their Influence upon the Adsorption of Organic Molecules on a Graphene Film, J. Am. Chem. Soc, vol.133, pp.9208-9211, 2011.

M. Mura and F. Silly, Experimental and Theoretical Analysis of Hydrogen Bonding in TwoDimensional Chiral 4?,4????-(1,4-Phenylene)bis(2,2?:6?,2?-terpyridine) Self-Assembled Nanoarchitecture, Journal of Physical Chemistry C, vol.119, pp.27125-27130, 2015.
URL : https://hal.archives-ouvertes.fr/cea-01349721

R. Breitwieser, Y. Hu, Y. C. Chao, R. Li, Y. R. Tzeng et al., Flipping nanoscale ripples of free-standing graphene using a scanning tunneling microscope tip, Carbon, vol.77, pp.236-243, 2014.

J. Choe, Y. Lee, L. Fang, G. Lee, Z. Bao et al., Direct imaging of rotating molecules anchored on graphene, vol.8, pp.13174-13180, 2016.

S. M. Kozlov, F. Viñes, and A. Görling, Bandgap Engineering of Graphene by Physisorbed Adsorbates, Adv. Mater, vol.23, pp.2638-2643, 2011.

H. Terrones, R. Lv, M. Terrones, and M. S. Dresselhaus, The role of defects and doping in 2D graphene sheets and 1D nanoribbons, Rep. Programme. Phys, vol.75, p.62501, 2012.