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The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae

J. Mark Cock 1 Lieven Sterck 2 Pierre Rouzé 2 Delphine Scornet 1 Andrew E. Allen 3 Grigoris Amoutzias 2 Véronique Anthouard 4 François Artiguenave 4 Jean-Marc Aury 4 Jonathan H Badger 3 Bank Beszteri 5 Kenny Billiau 2 Eric Bonnet 2 John H. Bothwell 6 Chris Bowler 7 Catherine Boyen 1 Colin Brownlee 6 Carl J Carrano 8 Bénédicte Charrier 1 Ga Youn Cho 1 Susana M Coelho 1 Jonas Collén 1 Erwan Corre 9 Corinne da Silva 4 Ludovic Delage 1 Nicolas Delaroque 10 Simon M. Dittami 1 Sylvie Doulbeau 11 Marek Elias 12 Garry Farnham 6 Claire M. M. Gachon 13 Bernhard Gschloessl 1 Svenja Heesch 1 Kamel Jabbari 4, 7 Claire Jubin 4 Hiroshi Kawai 14 Kei Kimura 15 Bernard Kloareg 1 Frithjof C. Küpper 13 Daniel Lang 16 Aude Le Bail 1 Catherine Leblanc 1, 17 Patrice Lerouge 18 Martin Lohr 19 Pascal J Lopez 20 Cindy Martens 2 Florian Maumus 21 Gurvan Michel 1 Diego Miranda-Saavedra 22 Julia Morales 23 Hervé Moreau 24 Taizo Motomura 15 Chikako Nagasato 15 Carolyn A Napoli 25 David R Nelson 26 Pi Nyvall-Collén 1 Akira F Peters 1 Cyril Pommier 27 Philippe Potin 1 Julie Poulain 4 Hadi Quesneville 27 Betsy Read 28 Stefan A. Rensing 16 Andrés Ritter 1, 29 Sylvie Rousvoal 1 Manoj Samanta 30 Gaelle Samson 4 Declan C Schroeder 6 Béatrice Ségurens 4 Martina Strittmatter 13 Thierry Tonon 1 James W Tregear 11 Klaus Valentin 5 Peter von Dassow 17 Takahiro Yamagishi 14 Yves van de Peer 2 Patrick Wincker 4
1 Végétaux marins et biomolécules
2 Department of Plant Systems Biology
3 J Craig Venter Institute
4 GENOSCOPE - Genoscope - Centre national de séquençage [Evry]
5 AWI - Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung
6 Marine Biological Association
7 IBENS - Institut de biologie de l'ENS Paris (UMR 8197/1024)
8 SDSU - San Diego State University
9 P3H - Phophorylation de protéines et Pathologies Humaines
10 Fraunhofer IZI - Fraunhofer Institute for Cell Therapy and Immunology
11 UMR DIAPC - Diversité et adaptation des plantes cultivées
12 Charles University [Prague]
13 SAMS - Scottish Association for Marine Science
14 Kobe University
15 Institute of Algological Research [Muroran]
16 Fakultät für Biologie = Faculty of Biology [Freiburg]
17 SBR - Station biologique de Roscoff [Roscoff]
18 Glyco-MEV - Laboratoire de Glycobiologie et Matrice Extracellulaire Végétale
19 JGU - Johannes Gutenberg - Universität Mainz
20 ENS Paris - École normale supérieure - Paris
21 IBENS - Institut de biologie de l'Ecole Normale Supérieure
22 Department of Haematology
23 MS - Mer et santé
24 OOB - Observatoire océanologique de Banyuls
25 University of Arizona
26 UTHSC - The University of Tennessee Health Science Center [Memphis]
27 URGI - Unité de Recherche Génomique Info
28 CAL STATE LA - California State University [Los Angeles]
29 LBCM - Laboratoire de Biotechnologie et Chimie Marines
30 Systemix Institute
Abstract : Brown algae (Phaeophyceae) are complex photosynthetic organisms with a very different evolutionary history to green plants, to which they are only distantly related(1). These seaweeds are the dominant species in rocky coastal ecosystems and they exhibit many interesting adaptations to these, often harsh, environments. Brown algae are also one of only a small number of eukaryotic lineages that have evolved complex multicellularity (Fig. 1). We report the 214 million base pair (Mbp) genome sequence of the filamentous seaweed Ectocarpus siliculosus (Dillwyn) Lyngbye, a model organism for brown algae(2-5), closely related to the kelps(6,7) (Fig. 1). Genome features such as the presence of an extended set of light-harvesting and pigment biosynthesis genes and new metabolic processes such as halide metabolism help explain the ability of this organism to cope with the highly variable tidal environment. The evolution of multicellularity in this lineage is correlated with the presence of a rich array of signal transduction genes. Of particular interest is the presence of a family of receptor kinases, as the independent evolution of related molecules has been linked with the emergence of multicellularity in both the animal and green plant lineages. The Ectocarpus genome sequence represents an important step towards developing this organism as a model species, providing the possibility to combine genomic and genetic(2) approaches to explore these and other(4,5) aspects of brown algal biology further.
Mots-clés : BIOLOGIE CELLULAIRE algues brunes phéophycées flore marine
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CEA | GENOSCOPE | AGROPOLIS | ADMM-EPEP | CMM | JACOB | CEA-DRF | UNIROUEN | SORBONNE-UNIVERSITE | GLYCOMEV | SU-SCIENCES | FR2424 | UMS-2348 | COMUE-NORMANDIE | P3H | INRA | CIRAD | UNIV-BREST | ENS-PARIS | UPMC | CNRS | IUEM | ADMM | IRD | INRAE | UBS | INSU | LBI2M | PSL

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J. Mark Cock, Lieven Sterck, Pierre Rouzé, Delphine Scornet, Andrew E. Allen, et al.. The $Ectocarpus$ genome and the independent evolution of multicellularity in brown algae. Nature, Nature Publishing Group, 2010, 465 (7298), pp.617-621. ⟨10.1038/nature09016⟩. ⟨cea-00906990⟩

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